Hello everyone, thanks for being patient!
The Cloud Compiler has been upgraded and now supports the following libraries, as well as standard Bean and Arduino code:
Adafruit_BMP085
Adafruit_BMP183
Adafruit_BMP183_Unified
Adafruit_CAP1188
Adafruit_DHT_sensor
Adafruit_DRV2605
Adafruit_FONA
Adafruit_FT6206
Adafruit_Fingerprint_Sensor
Adafruit_Flora_Pixel
Adafruit_GFX
Adafruit_GPS
Adafruit_Graphic_VFD_Display
Adafruit_HTU21DF
Adafruit_HX8357
Adafruit_LED_Backpack
Adafruit_LSM9DS0
Adafruit_MAX31855
Adafruit_MAX6675
Adafruit_MCP23008
Adafruit_MCP23017
Adafruit_MCP4725
Adafruit_MCP9808
Adafruit_MLX90614
Adafruit_MMA8451
Adafruit_MPL3115A2
Adafruit_MPR121
Adafruit_Motor_Shield
Adafruit_Motor_Shield_V2
Adafruit_NEC_remote_control
Adafruit_NeoPixel
Adafruit_PCD8544_Nokia_5110_LCD
Adafruit_PWM_Servo_Driver
Adafruit_RGB_LCD_Shield
Adafruit_SI1145
Adafruit_SSD1331_OLED_Driver
Adafruit_SSD1351
Adafruit_ST7735
Adafruit_Sensor
Adafruit_Si4713
Adafruit_Si5351
Adafruit_TFTLCD
Adafruit_TMP007
Adafruit_TPA2016
Adafruit_TSL2561
Adafruit_TSL2591
Adafruit_Thermal_Printer
Adafruit_Touch_Screen
Adafruit_Trellis
Adafruit_VC0706_Serial_Camera
Adafruit_VS1053
Adafruit_WS2801
BeanSD
EEPROM
Esplora
Ethernet
FastLED
Firmata
GSM
LiquidCrystal
NewPing
Robot_Control
Robot_Motor
SD
SPI
Servo
SoftwareSerial
Stepper
TFT
WiFi
Wire
Libraries currently slated for addition are:
ChronoDot
SoftPWM
Adafruit_TCS34725
Let us know if you are looking for support for other libraries, or if any of the libraries above are not working properly.